EasyMultiProfiler
Tutorial
Chapter 1 Introduction
1.1 Installation and update
1.2 basic information
Chapter 2 Import data
2.1 Multi-omics data
2.2 Single-omics data
2.3 Save and load data
2.4 Demo data and script
Chapter 3 Demo data
3.1 Load MAE
3.2 Summary MAE
Chapter 4 Data Extract
4.1 EMP_assay_extract
4.2 EMP_rowdata_extract
4.3 EMP_coldata_extract
Chapter 5 Data Preparation
5.1 EMP_collapse
5.2 EMP_adjust_abudance
5.3 EMP_feature_convert
5.4 EMP_decostand
5.5 EMP_impute
5.6 EMP_identify_assay
5.7 EMP_modify_assay
5.8 EMP_rrarefy
Chapter 6 Data Analysis
6.1 EMP_alpha_analysis
6.2 EMP_cluster_analysis
6.3 EMP_cor_analysis
6.4 EMP_diff_analysis
6.5 EMP_dimension_analysis
6.6 EMP_enrich_analysis
6.7 EMP_marker_analysis
6.8 EMP_GSEA_analysis
6.9 EMP_WGCNA_cluster_analysis
6.10 EMP_WGCNA_cor_analysis
6.11 EMP_multi_analysis
6.12 EMP_nework_analysis
Chapter 7 Data support
7.1 EMP_filter
7.2 EMP_history
7.3 EMP_result
7.4 EMP_summary
7.5 EMP_saver_var
7.6 EMP_taxonomy_import
7.7 EMP_function_import
7.8 EMP_normal_import
7.9 EMP_easy_import
Chapter 8 Data Virtualization
8.1 EMP_boxplot
8.2 EMP_scatterplot
8.3 EMP_enrich_dotplot
8.4 EMP_enrich_netplot
8.5 EMP_fitline_plot
8.6 EMP_GSEA_plot
8.7 EMP_heatmap_plot
8.8 EMP_sankey_plot
8.9 EMP_structure_plot
8.10 EMP_volcanol_plot
8.11 EMP_network_plot
Chapter 9 More Useful Tools
9.1 str_detect_multi
9.2 EMP_to_EMP1
9.3 top_detect
Chapter 10 More Examples
10.1 Meta data modified
10.2 Experiment data
10.3 Paired test and intervention cohort
10.4 Full taxonomy annotation
10.5 Installation issues
Contact
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7.7 EMP_function_import
7.6 EMP_function_import
Detailed in Section 2.1.4.
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